PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009133609.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Nin-like
Protein Properties Length: 938aa    MW: 103730 Da    PI: 5.678
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009133609.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK80.61.6e-25575654252
          RWP-RK   2 ekeisledlskyFslpikdAAkeLg.............................vclTvLKriCRqyGIkRWPhRkiksl 52 
                     ek++sl++l+++Fs+++kdAAk+Lg                             vc+T+LKriCRq+GI+RWP+Rki+++
  XP_009133609.1 575 EKNVSLSVLQQHFSGSLKDAAKSLGgefstfsyvlmsfivgqtfltldfvsnlaVCPTTLKRICRQHGIMRWPSRKINKV 654
                     89****************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151912.878564674IPR003035RWP-RK domain
PfamPF020421.7E-24577654IPR003035RWP-RK domain
SuperFamilySSF542774.25E-23828923No hitNo description
Gene3DG3DSA:3.10.20.2402.6E-24836917No hitNo description
SMARTSM006661.2E-25838920IPR000270PB1 domain
PROSITE profilePS5174523.091838920IPR000270PB1 domain
PfamPF005642.8E-18839919IPR000270PB1 domain
CDDcd064071.42E-36839919No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 938 aa     Download sequence    Send to blast
MEHPFASRDK VFGYQDISTE EMDSFSFGSG VRSLISDDMF NSSSNSELVN FDSFSTWCNS  60
PSVSDVLFAQ YGLSTSQSMP FGAITSAHAP ELRAATLPGL TRSFHDMESS YYGEERPSLQ  120
EMISQFDHSL DSVQLSGKRR RVANQKNGFP NLMNCTIPRS LSHSLDEKML KALSLFLESS  180
GSGEGILAQV WTPIKIGDQH VLSTCDQAYL LDPRLSQYRE VSRKFTFASE ANQCSFPGLP  240
GRVFISGVPE WTSNVVYYKT DEYLRMKHAI DNEVRGSIAI PILEASGTTC CAVMELVTSK  300
EKPNFDTEMD SVCRALQAVN LRTSASPRPQ FLSSNQRDAL AEIQDVLRAV CHAHRLPLAL  360
AWIPCSYGKG GKNQSGVLCV EETACYVNDT EMEGFVHVCL EHCLREKEGI VGRAFVSNKP  420
LFSSDVKAYD ISEYPLVQHA RKYGLNAAVA IKLRSTYTGE DDYILELFLP VSMKGSLEQQ  480
LLLDSLSGTM QRICRTLRTV SDVGEAKKEV SKTGVLNACS GNFQTMLSDS ELNSTRNIFS  540
DMSSDKDNSS TGSQGTYEQD MSKARTPEKK KSTTEKNVSL SVLQQHFSGS LKDAAKSLGG  600
EFSTFSYVLM SFIVGQTFLT LDFVSNLAVC PTTLKRICRQ HGIMRWPSRK INKVNRSLRK  660
IQTVLDSVQG VEGGLKFDSA TGEFVAVCPF IKELDTQKDP SSNVNNEHVR GHEDVAAQDA  720
SFELLKAKSV DNEIKLEEDI ITNGSFMEVN ASGEQWAWMA EQSSFHCSEE KKNNGNLSSQ  780
AIRCSGSINE PNHSLSCRMS GSSKGSGAVM LRSSSTSMDD SNQVRTQKSN SSESGSTTLT  840
VKATYREDTI RFKFEPSLGC SQLYKEVGKR FKLQEESFQL KYLDDEEEWV MLVTDSDLQE  900
CLEILYGMGK HTVKFLVRDL PAPIGSSAGS NCYLGTGL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137141KRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009133609.10.0PREDICTED: protein NLP8-like isoform X1
SwissprotO228640.0NLP8_ARATH; Protein NLP8
TrEMBLM4C7X90.0M4C7X9_BRARP; Uncharacterized protein
STRINGBra000307.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22992768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43500.20.0Nin-like family protein